Run the SpeciesPoolR Workflow

This function sets up and runs a targets workflow using the functions provided in the SpeciesPoolR package. The workflow includes steps for cleaning species data, counting species presences, filtering data, and generating buffers for spatial analysis.

Usage

run_workflow(
  workers = 2,
  error = "null",
  file_path,
  rastertemp,
  rasterLU,
  LanduseSuitability,
  dist = 500,
  filter = NULL,
  country = NULL,
  shapefile = NULL,
  plot = TRUE
)

Arguments

workers

Number of parallel workers to use in the crew controller. Default is 2.

error

Handling for errors in outdated targets. Default is "null".

file_path

Path to the Excel or csv file containing the data.

rastertemp

A file path to the raster file that will be used as a template for rasterizing the buffers.

rasterLU

A file path to the raster file that has the landuses that exist in the area that will be modeled.

LanduseSuitability

A string representing the file path to the raster file containing land-use binary suitability data.

dist

A numeric value specifying the buffer distance in meters. Default is 500 meters.

filter

An optional expression used to filter the resulting data.frame. This should be an expression written as if you were using dplyr::filter(). The default is NULL, meaning no filtering is applied.

country

A two-letter country code to define the area of interest for counting species presences. Default is NULL.

shapefile

Path to a shapefile defining the area of interest for counting species presences. Default is NULL.

plot

if TRUE (default) it will run the targets::tar_visnetwork() to plot the workflow

Value

Executes the targets pipeline.